Conferences and seminars given by the CBBL members since 2003. See also teaching activities here.

…forever under construction…

Organized:

Conferences and Seminars:

  • JVF “Towards a multiscale schema in the modelling of biomolecules and their function”, seminar at the International Institute of Molecular and Cell Biology (IIMCB), Warsaw, September 8th, 2011
  • Nils J. D. Drechsel, Chris J. Fennell, Ken A. Dill, JVF “ANALYTICAL NON-POLAR SOLVATION FREE ENERGY FOR THE SEA-WATER MODEL” 9th Triennal Congress of the World Association of Theoretical and Computational Chemists, Santiago de Compostela, 17-22 July 2011
  • JVF “Improvements in computer simulations in biomedicine and how they are going on-line“, conference at Vall d’Hebron Institut de Recerca (VHIR), May 24th, 2011
  • James Dalton, Albert Mascarell-Creus, Miguel Hernández, Juan Tortajada, Adrián Rejas, William Lalinde, Jordi Villà-Freixa “Activ8: a multi-layer 3D virtual network portal for personalized care and bioinformatics research” at NPS3Bio part of the JBI 2010, October 26th 2010.
  • Adrián López García de Lomana “Computational Approaches to the Modelling of Topological and Dynamical Aspects of Biochemical Networks”, thesis dissertation, October 19th 2010.
  • JVF, Raúl Alcántara, César Ávila, James Dalton, Nils Drechsel, Michael A. Johnston, Adrián López García de Lomana “From computational biochemistry to biomedical informatics at the CBBL/GRIB: tools and aplications” at Systems biology symposium: from neuroscience to genetic regulation networks and beyond, PRBB, Barcelona, September 9-10th 2010
  • JVF, Raúl Alcántara, César Ávila, Cris Charneco, Norma Díaz-Vergara, Nils Drechsel, Joaquim Paretas “Tinkering multiple levels in molecular simulations (when needed): from tunneling to folding” at Bioinformatics in Torun, June 10-12, 2010
  • JVF, Raúl Alcántara, César Ávila, Cris Charneco, James Dalton, Norma Díaz-Vergara, Nils Drechsel, Sinan Mutlu, Pau Rué “Molecular simulations got a wider scope: going multiscale” Invited conference. International Institute of Molecular and Cell Biology, Warsaw, Poland, June 9th, 2010
  • JVF, Raúl Alcántara, César Ávila, Cris Charneco, James Dalton, Norma Díaz-Vergara, Nils Drechsel, Sinan Mutlu, Joaquim Paretas “Multiscale simulations of protein function” at Multidisciplinary seminars, URV-DEQ, Tarragona. April 9th, 2010. PDF
  • JVF, Raúl Alcántara, Nils Drechsel, Kareem Khan, Juan R. Meneu “A multiscale simulation approach to investigate Protein Function” at Methods of Molecular Simulation 2009, Heidelberg, Dec 7th, 2009
  • JVF “Per Residue Characterization of Protein Function Through Solvation” at Biomolecular Simulations: Advanced Methods and Applications, Stockholm, June 28-30th, 2009
  • JVF “Simulaciones de fármacos y aplicaciones” at GICOR, Madrid, November 13-14th, 2008
  • JVF, conference at the 8th Bologna winter school on Bioinformatics for Systems and Synthetic Biology, Bologna, 19-23 February, 2007
  • JVF, “Parameter estimation in biochemical networks”,VII Annual Spanish Bioinformatics Conference, Zaragoza, November 2006
  • Jordi Villà-Freixa, Michael Johnston, Jaume Bonet, “Per residue characterization of protein-protein interfaces: a relationship between stability and functionality?”, 30th FEBS Congress and 9th IUBMB Conference, Budapest, 2-7 July 2005
  • Jordi Villà-Freixa, “From micro- to macroscopic studies of molecular mechanisms in the cell”, Invited conference at the IIMCB, Warsaw, June 2005
  • Adrián López García de Lomana, Gina Abelló, Berta Alsina, JVF, “Simulation of the Notch Genetic Network during Early Development of the Vertebrate Inner Ear”, Spanish Bioinformatics Conference, Barcelona, November 2004
  • JVF, “Computational studies on enzymatic phosphate hydrolysis”, Workshop on phosphoryl-transfer mechanisms, Warsaw, 27-28 June 2003

Posters:

  • Nils Drechsel, César Ávila, JVF “DEVELOPMENT OF A MULTISCALE FRAMEWORK TO STUDY THE ENERGETICS OF PROTEIN DYNAMICS IN PROTEIN-PROTEIN INTERACTIONS”, poster at the 3DSIG 2012 ISMB/ECCB (3DSIG 2012), Long Beach, California, July 13-14th, 2012
  • JVF, Nils Drechsel, César L. Ávila, Raúl Alcántara, Michael A. Johnston, Janusz Bujnicki “Multiscale molecular simulations of protein and RNA folding” MACROMOLECULAR DYNAMICS (Barcelona, 24-26 October, 2011).
  • J. Dalton, O. Kalid, JVF, N. Ben-Tal “NEW 3-D MODEL OF CFTR PROPOSES CONDUCTING STATE CONFORMATION & TARGET FOR CHANNEL BLOCKERS” XVI Congreso de la Sociedad Española de Química Terapéutica (València, 18-21 September 2011).
  • Biuse Guivernau, Marta Tajes, Fanny Rubio-Moscardó, Eva Ramos-Fernández, Mònica Bosch-Morató, Ernest Palomer, Toshiharu Suzuki, Henrik Molina, Gian Pietro Miscione, JVF and Francisco J. Muñoz “NITROTYROSINATION OF TRIOSEPHOSPHATE ISOMERASE BY AMYLOID ß-PEPTIDE INDUCES NEURONAL DEATH”, Present and Future of Alzheimer’s Research Madrid, September, 2011
  • Albert Mascarell-Creus, James Dalton, Miguel Hernández, Juan Tortajada, Adrián Rejas, William Lalinde, JVF “Activ8: an integrated multi-layer modeling and visualization tool & networking environment for patients, clinicians and researchers”, 6th Meeting of the Spanish System Biology Network (REBS) , 9-10th December 2010.  (PDF)
  • Nils J. D. Drechsel, JVF, César L. Ávila, Raúl Alcántara, Juan Ramón Meneu and Michael A. Johnston. “Implementation of a multiscale model for molecular dynamics simulations of protein folding and aggregation in Adun”, VPH conference 2010, Brussels, 29 September – 01 October 2010 (Best poster award, PDF)
  • James Dalton, Miguel Hernández, William Lalinde, Juan Tortjada, Sinan Mutlu, JVF. “Activ8: An Integrated Multilayer Visualization, Modelling and Professional Networking Environment to Handle Complex Diseases”, VPH conference 2010, Brussels, 29 September – 01 October 2010
  • Cesar L. Avila, Nils J.D. Drechsel, JVF, Rosana N. Chehin. “Exploring the free energy landscape of protein folding with a physics-based CG protein model”, 1st International Conference on Bioinformatics SoIBio, Chile,  26-28 September 2010.
  • Cesar L. Avila, Nils J.D. Drechsel, JVF, Rosana N. Chehin. “Multiscale modeling of proteins free energy landscape”, Latin American Protein Society Meeting, Argentina, 12-16 October 2010.
  • Joaquim Paretas, Gian Pietro Miscione, Giovani Giupponi, JVF “Computational Study of the Effect of Nitro-Tyrosination on TPI function”, SEBBM 2009, Oviedo, Sept. 2009 (PDF)
  • Dieter Maier, Miguel Hernandez, JVF, Sascha Losko, “Knowledge management in a Systems Biology approach to translational medicine“, 17th ISCB and 8th ECCB Conference, Stocholm, June 27th-July 2nd, 2009
  • JVF, Gianluigi Caltabiano, Abdul Kareem, Michael Johnston, Carles Corbí, Àlex Gómez-Garrido, Xavier Rovira, Joan Teyra “On the use of per residue stability information to assess protein function and interaction”, ISMB/ECCB 21-25 July 2007, Vienna

JVF: Jordi Villà-Freixa