Skip to main content
Universitat de Vic - Universitat Central de Catalunya
Món UVic

Menu

Skip to content
  • CBBL Home
    • About
    • Members
      • Join the CBBL
      • Current Members
      • Past members
    • Practical information
      • Tools and tips for HPC in the lab
      • Tools and tips for MD simulations
  • News
  • Research
    • Overview
    • Relevant Projects
    • Conferences and presentations
    • Publications
  • Software
    • Overview
    • sbmOpenMM
      • Documentation
      • Download
      • Tutorials
  • Teaching and training
    • Overview
    • PYT: Introduction to Python
    • Operations research
    • Operations Research 22-23
    • Santiago de Chile Enero 2011
    • Teaching projects
  • Outreach
    • Overview
    • AI Applications in Biomedical Sciences
    • Update in Omics Data Analysis: genome structure, metagenomics and gene regulation
    • Workshop of the Interuniversity PhD Program in Bioinformatics (06/02/2026)
  • Course on Molecular Dynamics simulations. Universidad Andrés Bello, Chile, January 14-19th 2026

02 – Coarse grained SBM simulations

Tutorial input files can be obtained from:

https://github.com/CompBiochBiophLab/sbm-openmm/blob/master/tutorials/basic/02-AllAtom

Instructions are in the following Jupyter Notebook:

https://github.com/CompBiochBiophLab/sbm-openmm/blob/master/tutorials/basic/02-AllAtom/allHeavyAtomSBM.ipynb

https://gist.github.com/Martin-Floor/14842052eb28f61fb9e8439bd8b732dd

Share this:

  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on Facebook (Opens in new window) Facebook
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to share on X (Opens in new window) X

Proudly powered by WordPress