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Metabolic characterization of neurogenetic disorders involving glutamatergic neurotransmission Illescas, S., Diaz-Osorio, Y., Serradell, A., Toro-Soria, L., Musokhranova, U., Juliá-Palacios, N., Ribeiro-Constante, J., Altafaj, X., Olivella, M., O’Callaghan, M., Darling, A., Armstrong, J., Artuch, R., García-Cazorla, À., Oyarzábal, A. J Inherit Metab Dis. (2023) https://doi.org/10.1021/acschemneuro.3c00578 |
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SIRT1 regulates DNA damage signaling through the PP4 phosphatase complex Rasti, G., Becker, M., Vazquez, B.N., Espinosa-Alcantud, M., Fernández-Duran, I., …, Olivella, M. Nucleic Acids Res. (2023) https://doi.org/10.1093/nar/gkad504 |
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Expanding the phenotypic spectrum of TRAPPC11-related muscular dystrophy: 25 Roma individuals carrying a founder variant Justel, M., Jou, C., Sariego-Jamardo, A., Juliá-Palacios, N.A., Ortez, C., …, Olivella, M. J Med Genet (2023) https://doi.org/10.1136/jmg-2022-109132 |
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Identification of Aggregation Mechanism of Acetylated PHF6* and PHF6 Tau Peptides Based on Molecular Dynamics Simulations and Markov State Modeling Shah, S. J. A., Zhang, Q., Guo, J., Liu, H., Liu, H., & Villà-Freixa, J. ACS chemical neuroscience (2023) https://doi.org/10.1021/acschemneuro.3c00578 |
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Inferring pointwise diffusion properties of single trajectories with deep learning Requena, B., Masó-Orriols, S., Bertran, J., Lewenstein, M., Manzo, C., Muñoz-Gil, G. Biophysical Journal (2023) https://doi.org/10.1016/j.bpj.2023.10.015 |
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IκB kinase-α coordinates BRD4 and JAK/STAT signaling to subvert DNA damage-based anticancer therapy Pecharromán, I., Solé, L., Álvarez-Villanueva, D., Lobo-Jarne, T., Alonso-Marañón, J., Bertran, J., …, Espinosa, L. The EMBO journal (2023) https://doi.org/10.15252/embj.2023114719 |
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A toolbox of machine learning software to support microbiome analysis Marcos-Zambrano, L. J., …, Calle, M. L., Pujolassos, M., Susín, A. Frontiers Microbiology (2023) https://doi.org/10.3389/fmicb.2023.1250806 |
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coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies Calle, M.L., Pujolassos, M. & Susin, A. BMC Bioinformatics (2023) https://doi.org/10.1186/s12859-023-05205-3 |
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Mutations in the RACGAP1 gene cause autosomal recessive congenital dyserythropoietic anemia type III Hernández. G., Romero-Cortadellas, L., Ferrer-Cortès, X., Venturi, V., Dessy-Rodriguez, M., Olivella, M., et al. Haematologica (2023) https://doi.org/10.3324/haematol.2022.281277 |
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Identification of dynamic microbial signatures in longitudinal studies M.Luz Calle, Antoni Susín biorXiv (2022) 10.1101/2022.04.25.489415 |
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Identification of homologous GluN subunits variants accelerates Santos-Gómez, A., García-Recio, A., Miguez-Cabello, F., Soto, D., Altafaj, X., Olivella, M. Front Cell Neurosci (2022) https://doi.org/10.3389/fncel.2022.998719 |
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Integrative Approach to Predict Severity in Nonketotic Hyperglycinemia Kuseyri Hübschmann, O., Juliá-Palacios, N.A., Olivella M., et al. Ann Neurol (2022) https://doi.org/10.1002/ana.26423 |
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Disruption of the HLA-E/NKG2X axis is associated with uncontrolled HIV infections Romero-Martín, L., Duran-Castells, C., Olivella, M., Rosás-Umbert, M., Ruiz-Riol, M., Sanchez, J., Hartigan-O’Connor, D., Mothe, B., Olvera, À., Brander, C. Front Immunol. (2022) https://doi.org/10.3389/fimmu.2022.1027855 |
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Objective comparison of methods to decode anomalous diffusion Gorka Muñoz-Gil, Giovanni Volpe, …, Maciej Lewenstein, Ralf Metzler, and Carlo Manzo Nature Communications 12, 6253 (2021) https://doi.org/10.1038/s41467-021-26320-w |
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Extreme Learning Machine for the Characterization of Anomalous Diffusion from Single Trajectories Carlo Manzo Journal of Physics A: Mathematical and Theoretical 54, 334002 (2021) 10.1088/1751-8121/ac13dd |
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A toolkit for the quantitative evaluation of chronic wounds evolution for early detection of non-healing wounds Marta Cullell-Dalmau, Marta Otero-Viñas, Marta Ferrer-Solà, Helena Sureda-Vidal, and Carlo Manzo Journal of Tissue Viability 30 (2), 161-167 (2021) doi:10.1016/j.jtv.2021.02.009 [link] |
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Convolutional Neural Network for Skin Lesion Classification: Understanding the Fundamentals Through Hands-On Learning Marta Cullell-Dalmau, Sergio Noé, Marta Otero-Viñas, Ivan Meić, and Carlo Manzo Frontiers in Medicines 8, 13 (2021) doi:10.3389/fmed.2021.644327 [link] |
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Paradigmatic De Novo GRIN1 Variants Recapitulate Pathophysiological Mechanisms Underlying GRIN1-Related Disorder Clinical Spectrum Santos-Gómez, A., Miguez-Cabello, F., Juliá-Palacios, N., García-Navas, D., Soto-Insuga, V., …, Olivella, M. Int J Mol Sci (2021) https://doi.org/10.3390/ijms222312656 |
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Shear forces induce ICAM-1 nanoclustering on endothelial cells that impact on T cell migration Izabela K Piechocka, Sarah Keary, Alberto Sosa-Costa, Lukas Lau, Nitin Mohan, Jelena Stanisavljevic, Kyra JE Borgman, Melike Lakadamyali, Carlo Manzo, Maria F Garcia-Parajo Biophysical Journal 120, 2644-2656 (2021) doi:10.1016/j.bpj.2021.05.016 [link][biorXiv] |
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Single-molecule optical tweezers reveals folding steps of the domain swapping mechanism of a protein Bustamante, A.; Rivera, R.; Floor, M.; Babul, J.; Baez, M. Biophysical Journal (2021) doi:10.1016/j.bpj.2021.09.026 [link] |
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TMSNP: a web server to predict pathogenesis of missense mutations in the transmembrane region of membrane proteins Garcia-Recio, A., Gómez-Tamayo, J.C., Reina, I., Campillo, M., Cordomí, A., Olivella, M. NAR Genom Bioinform (2021) https://doi.org/10.1093/nargab/lqab008 |
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GRIN database: A unified and manually curated repertoire of GRIN variants Garcia-Recio, A., Santos-Gómez, A., Soto, D., Julia-Palacios, N., García-Cazorla, À., Altafaj, X., Olivella, M. Hum Mutat (2021) https://doi.org/10.1002/humu.2414 |
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Dynamic chromatin association of IκBα is regulated by acetylation and cleavage of histone H4 Marruecos, L.; Bertran, J.; Álvarez-Villanueva, D.; Mulero, M.C.; Guillén, Y.; Palma, L.G.; Floor, M.; Vert, A.; Arce-Gallego, S.; Pecharroman, I.; Batlle, L.; Villà-Freixa, J.; Ghosh, G.; Bigas, A.; Espinosa, L. EMBO Reports e52649, 1469-3178 (2021) doi:10.15252/embr.2021.52.649 [link] |
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SBMOpenMM: A Builder of Structure-Based Models for OpenMM Floor, M.; Li, K.; Estevez-Gay, M.; Agulló, L.; Muñoz-Torres, P.M.; Hwang, J. K.; Osuna, S.; Villà-Freixa, J. J Chem Inf Model 61 (7), 3166-3171 (2021) doi:10.1021/acs.jcim.1c00122 [link] |
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Obesity status and obesity-associated gut dysbiosis effects on hypothalamic structural covariance O. Contreras-Rodriguez, M. Arnoriaga-Rodríguez, R. Miranda-Olivos, G. Blasco, C. Biarnés, J. Puig, J. Rivera-Pinto, M. L. Calle, V. Pérez-Brocal, A. Moya, C. Coll, L. Ramió-Torrentà, C. Soriano-Mas & J. M. Fernandez-Real Int J Obes (2021). doi:10.1038/s41366-021-00953-9 [link] |
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SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions Aguirre-Plans, J.; Meseguer, A., Molina-Fernandez, R.; Marín-López, M. A.; Jumde, G.; Casanova, K.; …; Fernandez-Fuentes, N.; Oliva, B BMC Bioinformatics 22 (1) (2021) doi:10.1186/s12859-020-03770-5 [link] |
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Production of toxoplasma gondii recombinant antigens in genome-edited escherichia coli Redondo, A.; Wood, D.; Amaral, S.; Ferré, J.; Goti, D.; Bertran, J. Applied Biochemistry and Microbiology 57 (2), 152-160 (2021) doi:10.1134/S0003683821020137 [link] |
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An Integrated Computational Platform for the Study of Protein-Protein Interaction Data Mirela-Bota, P.; Aguirre-Plans, J.; Meseguer, A.; Galletti, C.; Segura, J.; Planas-Iglesias, J.; Fernandez-Fuentes, N. Journal of Molecular Biology 433 (11), (2021) doi:10.1016/j.jmb.2020.09.015 [link] |
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Preclinical developmet of a humanized chimeric antigen receptor against B-cell maturation antigen for multiple myeloma Perez-Amill, L., Suñe, G., Antoñana-Vildosola, A., Castella, M.; Najjar, A., Bonet, J., Fernandez, N.; …; Martín-Antonio, B. Haematologica 106 (1), 173-184 (2021) doi:10.3324/haematol.2019.228577 [link] |
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An ensemble learning approach for modeling the systems biology of drug-induced injury Aguirre-Plans, J.; Piñero, J.; Souza, T.; Callegaro, G.; Kunnen, S.J.; Sanz, F.; …; Fernandez-Fuentes, N.; …; Oliva, B Biology Direct 16 (1), (2021) doi:10.1186/s13062-020-00288-x [link] |
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Evaluation of computationally designed peptides against tweak, a cytokine of the tumour necrosis factor ligand family Badia-Villanueva, M.; Defaus, S.; Foj, R.; Andreu, D.; Oliva, B.; Sierra, A.; Fernandez-Fuentes, N International Journal of Molecular Sciences 22 (3), (2021) doi:10.3390/ijms22031066 [link] |
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Stabilisation of half MCM ring by Cdt1 during DNA insertion Guerrero-Puigdevall, M., Fernandez-Fuentes, N., & Frigola, J. Nature Communications 12 (1), (2021) doi:10.1038/s41467-021-21932-8 [link] |
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On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: Application on human CTCF Meseguer, A.; Arman, F.; Fornes, O.; Molina-Fernandez, R.; Bonet, J.; Fernandez-Fuentes, N. NAR Genomics and Bioinformatics, 2 (3), (2021) doi:10.1093/nargab/lqaa046 [link] |
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The anomalous diffusion challenge: single trajectory characterisation as a competition Gorka Muñoz-Gil, Giovanni Volpe, Miguel Angel García-March, Ralf Metzler, Maciej Lewenstein, and Carlo Manzo In: Emerging Topics in Artificial Intelligence 2020 11469, 114691C (2020) – International Society for Optics and Photonics doi:10.1117/12.2567914 [link][arXiv:2003.12036] |
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Membrane receptor MerTK is a newly identified transcriptional regulator that associates to chromatin as nanoclusters during human DC differentiation Borgman, K.J.E., Flórez-Grau, G., Ricci M.A., Manzo, C., Lakadamyali, M., Cambi, A., Benítez-Ribas, D., Campelo, F., Farcia-Parajo, M. biorXiv (2020) 10.1101/2020.04.16.044974 |
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A machine learning method for single trajectory characterization G. Muñoz-Gil, M. A. Garcia-March, C. Manzo, J. D. Martín-Guerrero, and M. Lewenstein New Journal of Physics 22 (1), 013010 (2020) doi:10.1088/1367-2630/ab6065 [link][arXiv:1903.02850] |
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Bayesian analysis of data from segmented super-resolution images for quantifying protein clustering T. Kosǔta, M. Cullell-Dalmau, F. Cella Zanacchi, and C. Manzo Physical Chemistry Chemical Physics 22, 1107-1114 (2020) doi:10.1039/C9CP05616E[link] |
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Research Techniques Made Simple: Deep Learning for the Classification of Dermatological Images Marta Cullell-Dalmau, Marta Otero-Viñas, and Carlo Manzo Journal of Investigative Dermatology 140 (3), 507-514.e1 (2020) doi: 10.1016/j.jid.2019.12.029[link] |
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Dynamic actin-mediated nano-scale clustering of CD44 regulates its meso-scale organization at the plasma membrane Parijat Sil, Nicolas Mateos, Sangeeta Nath, Sonja Buschow, Carlo Manzo, Kenichi G. N. Suzuki, Takahiro Fujiwara, Akihiro Kusumi, Maria F. Garcia-Parajo, and Satyajit Mayor Molecular Biology of the Cell 31 (7), 561-579 (2020) doi: 10.1091/mbc.E18-11-0715[link] |
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Direct and fast assessment of antimicrobial surface activity using molecular dynamics simulation and time-lapse imaging Rafaël Sibilo, Ilaria Mannelli, Ramon Reigada, Carlo Manzo, Mehmet A Noyan, Prantik Mazumder, and Valerio Pruneri Analytical Chemistry 92 (10), 6795-6800 (2020) doi: 10.1021/acs.analchem.0c00367[link] |
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TL1A-DR3 plasma levels are predictive of HIV-1 disease control, and DR3 costimulation boosts HIV-1-specific T cell responses Oriol-Tordera, B., Olvera, A., Duran-Castells, C. Llano, A., Mothe, B., Massanella, M., Dalmau, J., Ganoza, C., Sanchez, J., Calle, M.L., Clotet, B., Martinez-Picado, J., Negredo, E., Blanco, J., Hartigan-O’Connor, D., Brander, C., Ruiz Riol, M. Journal of Immunology 205(12), 3348–3357 (2020) doi: 10.4049/jimmunol.2000933[link] |
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Variable selection in microbiome compositional data analysis. Susin A., Wang Y, Lê Cao K-A, Calle M.L. NAR Genomics and Bioinformatics 2 (2), lqaa029 (2020) doi: 10.1093/nargab/lqaa029[link] |
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Ancestral function of Inhibitors-of-kappaB regulates Caenorhabditis elegans development Brena, D., Bertran, J., Porta-de-la-Riva, M., Guillén, Y., Cornes, E Scientific Reports, 10 (1), 16153-0 (2020) doi: 10.1038/s41598-020-73146-5.[link] |
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DIMERBOW: exploring possible GPCR dimer interfaces García-Recio, A., Navarro, G., Franco, R., Olivella, M., Guixà-González, R., Cordomí A. Bioinformatics Oxford, 36 (10), 3271-3272 (2020) doi: 10.1093/bioinformatics/btaa117[link] |
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Efficient elimination of primary B-ALL cells in vitro and in vivo using a novel 4-1BB-based CAR targeting a membrane-distal CD22 epitope Velasco-Hernandez, T., Zanetti, S.R., Roca-Ho, H., Gutierrez-Aguera, F., Petazzi, P., Sánchez-Martínez, D., Fernández-Fuentes, N., Menendez P Journal for immunotherapy of cancer, 8 (2), 000896-0 (2020) doi: 10.1136/jitc-2020-000896[link] |
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HomolWat: a web server tool to incorporate «homologous» water molecules into GPCR structures Mayol, E., García-Recio, A., Tiemann, J.K.S., Hildebrand, P.W., Guixà-González, R., Olivella, M., Cordomí A. Nucleic Acids Research, 48 (1), 54-59 (2020) doi: 10.1093/nar/gkaa440[link] |
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Iκbα Deficiency Imposes a Fetal Phenotype to Intestinal Stem Cells Marruecos, L., Bertran, J., Guillén, Y., González, J., Batlle, R., López-Arribillaga, E., Garrido, M., Ruiz-Herguido, C., Lisiero, D., González-Farré, M., Arce, S., Iglesias, M., Nebreda, A.R., Miyamoto, S., Bigas, A., Espinosa Ll. EMBO Reports (2020) doi: 10.2139/ssrn.3389376[link] |
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In-silico simulated prototype-patients using TPMS technology to study a potential adverse effect of sacubitril and valsartan Jorba, G., Aguirre-Plans, J., Junet, V., Segú-Vergés, C., Ruiz, J. L., Pujol, A., Fuentes, N., Mas, JM., Oliva B. PLoS ONE 15(2), (2020) doi: 10.1371/journal.pone.0228926.[link] |
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Path-Based Analysis for Structure-Preserving Image Filtering Xu, L., Wang, F., Dempere-Marco, L., Wang, Q., Yang, Y., Hu XP. Journal of Mathematical Imaging and Vision, 176-195 (2020) doi: 10.1007/s10851-019-00941-9[link] |
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Methylation regulation of antiviral host factors, Interferon Stimulated Genes (ISGs) and T-cell responses associated with natural HIV control Oriol-Tordera, B., Berdasco, M., Llano, A., Mothe, B., Galvez, C., Martínez-Picado, J., Carrillo, J., Blanco, J, … Clotet, B., Calle, M.L., Brander, C., Ruiz Riol M. PLoS Pathogens 16 (8), 1008678-0 (2020) doi: 10.1371/journal.ppat.1008678.[link] |
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Disease-associated GRIN protein truncating variants trigger NMDA receptor loss-of-function Santos-Gomez, A.; Miguez-Cabello, F.; Garcia-Recio, A.; Locubiche-Serra, S.; Garcia-Diaz, R.; Soto-Insuga, V.; Olivella, M. Human Molecular Genetics 29 (4), 3859-3871 (2020) doi: 10.1093/hmg/ddaa220[link] |
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SirT7 auto-ADP-ribosylation regulates glucose starvation response through mH2A1 Simonet, N.G., Thackray, J.K., Vazquez, B N., Ianni, A., Espinosa-Alcantud, M., Morales-Sanfrutos, J., Olivella, M. Science advances 6 (30), 0-0 (2020) doi: 10.1126/sciadv.aaz2590[link] |
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GPCRmd uncovers the dynamics of the 3D-GPCRome Rodríguez-Espigares, I.; Torrens-Fontanals, M.; Tiemann, JKS.; Aranda-García, D.; Ramírez-Anguita, JM.; …;Olivella, M. Nature Methods 17, 777-787 (2020) doi: 10.1038/s41592-020-0884-y[link] |
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Analysis of the winning probability and the scoring actions in the American professional soccer championship. Altarriba-Bartes, A., Calle, M., Susín, A., Gonçalves, B., Vives, M., Sampaio, J., Peña J. Revista internacional de ciencias del deporte 16 (59), 67-84 (2020) doi: 10.5232/ricyde2020.05906[link] |
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Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions Meseguer, A., Dominguez, L., Bota, P.M., Aguirre-Plans, J., Bonet, J., Fernandez-Fuentes, N. Protein Science 29 (10), 2112-2130 (2020) doi: 10.1002/pro.3930[link] |
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Quantifying motor protein copy number in super-resolution using an imaging invariant calibration F. Cella Zanacchi, C. Manzo, R. Magrassi, N.D. Derr, M. Lakadamyali Biophysical Journal 116, 2195-2203 (2019) [link] |
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Diffusion through a network of compartments separated by partially-transmitting boundaries G. Muñoz-Gil, M.A. García-March, C. Manzo, A. Celi, M. Lewenstein Frontiers in Physics 7, 31 (2019) [link] doi: 10.3389/fphy.2019.00031 |
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Inhomogeneous membrane receptor diffusion explained by a fractional heteroscedastic time series model M. Balcerek, H. Loch-Olszewska, J. A. Torreño-Piña, M. F. Garcia-Parajo, A. Weron, C. Manzo, K. Burnecki Physical Chemistry Chemical Physics 21, 3114-3121 (2019) [link] |
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Evolution of the gut microbiome following acute HIV-1 infection Rocafort M., Noguera-Julià M., Rivera J., Pastor L., Guillén Y., Langhorst J., Parera M., Mandomando I., Carrillo J., Urrea V., Rodríguez C., Casadellà M., Calle M.L., Clotet B., Blanco J., Naniche D., Paredes R. Microbiome, Volume 7, Issue 73, 11 (2019) [link] doi: 10.1186/s40168-019-0687-5 |
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Statistical Analysis of Metagenomics Data Calle ML Genomics & Informatics, Volume 17, Issue 1, 31 (2019) [link] doi: 10.5808/GI.2019.17.1.e6 |
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Challenges in the Integration of Omics and Non-Omics Data López de Maturana E, Alonso L, Alarcón P, Adoración Martín-Antoniano I, Pineda S, Piorno L, Calle ML and Malats N. Genes, Volume 10, Issue 3, 2, Page 238 (2019) [link] doi: 10.3390/genes10030238 |
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Extremely low neonicotinoid doses alter navigation of pest insects along pheromone plumes Navarro-Roldán, Miguel A., Amat, Carles, Bau, Josep, Gemeno César Scientific Reports, 9(1) (2019) [link] doi: 10.1038/s41598-019-44581-w. |
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Gestalt-Grouping based on Path Analysis for Saliency Detection Xu, Lijuan, Ji, Zhihang, Dempere-Marco, Laura, Wang, Fan, Hu Xioapeng Signal Processing: Image Communication, 78, 9-20 (2019) [link] doi: 10.1016/j.image.2019.05.017 |
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GM2-GM3 gangliosides ratio is dependent on GRP94 through down-regulation of GM2-AP cofactor in brain metastasis cells Bedia, C., Badia, M., Muixí, L., Levade, T., Tauler, R., Sierra A. Scientific Reports, 9(1) (2019) [link] doi: 10.1038/s41598-019-50761-5 |
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GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets Aguirre-Plans, J., Piñero, J., Sanz, F., Furlong, L. I., Fernandez-Fuentes, N., Oliva, B., Guney E. Journal of Molecular Biology, 431(13), 2477-2484 (2019) [link] doi: 10.1016/j.jmb.2019.02.027 |
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IKK¿ Kinase Regulates the DNA Damage Response and Drives Chemo-resistance in Cancer Colomer, C., Margalef, P., Villanueva, A., Vert, A., Pecharroman, I., Solé, L., González-Farré, M., Alonso, J., Montagut, C., Martinez-Iniesta, M., Bertran, J., Borràs, E., Iglesias, M., Sabidó, E., Bigas, A., Boulton, S.J., Espinosa L. Molecular Cell, 75(4), 669-682 (2019) [link] doi: 10.1016/j.molcel.2019.05.036 |
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Inter-residue interactions in alpha-helical transmembrane proteins Mayol, E., Campillo, M., Cordomi, A., Olivella M. Bioinformatics, 35(15), 2578-2584 (2019) [link] doi: 10.1093/bioinformatics/bty978 |
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l-Serine dietary supplementation is associated with clinical improvement of loss-of-function GRIN2B -related pediatric encephalopathy Soto, D., Olivella, M., Grau, C., Armstrong, J., Alcon, C., Gasull, X., Altafaj X. Science Signaling, 12(586) (2019) [link] doi: 10.1126/scisignal.aaw0936 |
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Potential role of a clinical, taxonomical classification and RNA expression integrated signature to predict response to neoadjuvant platinum-based chemotherapy in muscle-invasive bladder cancer (MIBC) patients Font, A., Domenech, M., Ramirez, J. L., Gago, J., Carrato, C., Cadenas, B. Annals of Oncology, 30 (2019) [link] doi: 10.1093/annonc/mdz249.030 |
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Towards Path-based Semantic Dissimilarity Estimation for Scene Representation using Bottleneck Analysis Xu, L., Dempere-Marco, L., Wang, F., Ji, Z., Hu X.P. IET Computer Vision, 13(8), 691-699 (2019) [link] doi: 10.1049/iet-cvi.2018.5560 |
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PLANT: A method for detecting changes of slope in noisy trajectories A. Sosa-Costa, I. K. Piechocka, L. Gardini, F. S. Pavone, M. Capitanio, M. F. Garcia-Parajo, C. Manzo Biophysical Journal 114, 2044-2051 (2018) [link] |
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Separating actin-dependent chemokine receptor nanoclustering from dimerization indicates a role for clustering in CXCR4 signaling and function L. Martínez-Muñoz, J. . Rodríguez-Frade, R. Barroso, C. O. S. Sorzano, J. A. Torreño-Pina, C. A. Santiago, C. Manzo, P. Lucas, E. M. García-Cuesta, E. Gutierrez, L. Barrio, J. Vargas, G. Cassio, Y. R. Carrasco, F. Sánchez-Madrid, M. F. García-Parajo, M. Mellado Molecular Cell 70, 106-119 (2018) [link] |
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Balances: a new perspective for microbiome analysis Rivera Pinto J, Egozcue JJ, Pawlowsky-Glahn V, Paredes R, Noguera-Julian M, Calle ML mSystems 3 (4) (2018) [link] |
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Rett-like severe encephalopathy caused by a de novo GRIN2B mutation is attenuated by D-serine dietary supplement Soto, D., Olivella, M., Grau, C., Armstrong, J., Alcon, C., Gasull, X Biological Psychiatry 83 (2), 160-172 (2018) [link] |
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Comparison of Attraction and Trapping Capabilities of Bucket- and Delta-Style Traps With Different Pheromone Emission Rates for Gypsy Moths (Lepidoptera: Erebidae): Implications for Understanding Range of Attraction and Utility in Surveillance Ring T Cardé Josep Bau Joseph S Elkinton Environmental Entomology, 47 (1), 107–113 (2018) [link] |
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Transient subdiffusion from an Ising environment G. Muñoz-Gil, C. Charalambous, M. A. García-March, M. F. Garcia-Parajo, C. Manzo, M. Lewenstein, and A. Celi Physical Review E 96, 052140 (2017) [link] |
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Planar optical nanoantennas resolve cholesterol-dependent nanoscale heterogeneities in the plasma membrane of living cells R. Regmi , P. M. Winkler , V. Flauraud , K. J. E. Borgman, C. Manzo, J. Brugger , H. Rigneault, J. Wenger, M. F. García-Parajo Nano Letters 17, 6295-6302 (2017) [link] |
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A DNA origami platform for quantifying protein copy number in super-resolution F. Cella Zanacchi, C. Manzo, A. S. Alvarez, N. D. Derr, M. F. Garcia-Parajo, M. Lakadamyali Nature Methods 14, 789-792 (2017) [link] |
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Nonergodic subdiffusion from transient interactions with heterogeneous partners C. Charalambous, G. Muñoz-Gil, A. Celi, M. F. Garcia-Parajo, M. Lewenstein, C. Manzo, M. A. García-March Physical Review E 95, 032403 (2017) [link] |
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Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers Vesterbacka J, Rivera J, Noyan K, Parera M, Neogi U, Calle M, Paredes R, Sönnerborg A, Noguera-Julian M & Nowak P Scientific Reports 7, 6269 (2017) [link] |
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Rett-like Severe Encephalopathy Caused by a De Novo GRIN2B Mutation Is Attenuated by D-serine Dietary Supplement Soto D, Olivella M, Grau C, Armstrong J, Alcon C, Gasull X, Gómez de Salazar M, Gratacòs-Batlle E, Ramos-Vicente D, Fernández-Dueñas V, Ciruela F, Bayés À, Sindreu C, López-Sala A, García-Cazorla À, Altafaj X Biol Psychiatry, S0006-3223(17)31671-2 (2017) [link] doi: 10.1016/j.biopsych.2017.05.028 |
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Proteoliposomal formulations of an HIV-1 gp41-based miniprotein elicit a lipid-dependent immunodominant response overlapping the 2F5 binding motif Molinos-Albert LM, Bilbao E, Agulló L, Marfil S, García E, Rodríguez de la Concepción ML, Izquierdo-Useros N, Vilaplana C, Nieto-Garai JA, Contreras FX, Floor M, Cardona PJ, Martinez-Picado J, Clotet B, Villà-Freixa J, Lorizate M, Carrillo J & Blanco J Scientific Reports 7, 40800 (2017) [link] doi:10.1038/srep40800 |
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Eye-Tracking Data in Visual Search Tasks: A Hallmark of Cognitive Function V Pallarés, M Hernández, L Dempere-Marco Converging Clinical and Engineering Research on Neurorehabilitation II, 873-877 (2017) [link] |
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Genetic and functional characterization of disease associations explains comorbidity Rubio-Perez C, Guney E, Aguilar D, Piñero J, Garcia-Garcia J, Iadarola B, Sanz F, Fernandez-Fuentes N, Furlong L.I., Oliva B Scientific Reports 7, 6207 (2017) [link] doi:10.1038/s41598-017-04939-4 |
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Impact of HLA-DRB1 allele polymorphisms on control of HIV infection in a Peruvian MSM cohort Oriol-Tordera B, Llano A, Ganoza C, Cate S, Hildebrand W, Sanchez J, Calle ML, Brander C, Olvera A. HLA 90(4), 234-237 (2017) [link] doi: 10.1111/tan.13085 |
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Statistical Challenges for Human Microbiome Analysis Rivera-Pinto J, Estany C, Paredes R, Calle M, Noguera-Julián M, the MetaHIV-Pheno Study Group Trends in Mathematics 7. Birkhäuser, Cham (2017) [link] |
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Kernel-Based Measure of Variable Importance for Genetic Association Studies Gallego V, Calle ML, Oller R The International Journal of Biostatistics (2017) [link] doi:10.1515/ijb-2016-0087 |
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A Ruminal Peptide with Antimicrobial Potential against Enterococcus faecalis Oyama LB, Crochet JA, Edwards JE, Girdwood SE, Cookson AR, Fernandez-Fuentes N, Hilpert K, Golyshin PN, Golyshina OV, Privé F, Hess M, Mantovani HC, Creevey CJ, Huws SA. Buwchitin Front Chem 5(51) (2017) [link] doi: 10.3389/fchem.2017.00051 |
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Changes in membrane sphingolipid composition modulate dynamics and adhesion of integrin nanoclusters C. Eich, C. Manzo, S. de Keijzer, G.-J. Bakker, I. Reinieren-Beeren, M. F. Garcia-Parajo, A. Cambi Scientific Reports 6, 20693 (2016) [link] |
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Uncovering homo-and hetero-interactions on the cell membrane using single particle tracking approaches J. A. Torreno-Pina, C. Manzo, M. F. Garcia-Parajo Journal of Physics D: Applied Physics 49 (10), 104002 (2016) [link] |
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Stem cell-like transcriptional reprogramming mediates metastatic resistance to mTOR inhibition Mateo, F., Arenas, E., Aguilar, H., Sierra, A., Pujana, M. Oncogene 36, 2737–2749 (2016) [link] doi:10.1038/onc.2016.427 |
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Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma Hedegaard J, Lamy P, Nordentoft I, Algaba F, Høyer S, Ulhøi B, Vang S, Reinert T, Hermann G, Mogensen K, Houlberg Thomsen, Nielsen M, Marquez M, Segersten U, Aine M, Hoglund M, Birkenkamp-Demtroder K, Fristrup N, Borre M, Hartmann A, Stohr R, Wach S, Keck B, Seitz A, Nawroth R, Maurer T, Tulic C, Simic T, Junker K, Horstmann M, Harving N, Petersen A, Calle ML, Steyerberg E, Beukers W, van Kessel K, Bjerggaard J, Skou Pedersen J, Malmstrom P, Malats N, Real F, Zwarthoff E, Ørntoft T, Dyrskjøt L Cancer Cell (2016) [link] doi: 10.1016/j.ccell.2016.05.004 |
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A new PDAC mouse model originated from iPSCs-converted pancreatic cancer stem cells (CSCcm) Sanchez Calle, A., Nair, N., KoKo Oo, A., Prieto-Vila, M., Koga, M., Cahya Khayrani, A., Hussein, M., Hurley, L., Vaidyanath, A., Seno, A., Iwasaki, Y., Calle, M., Kasai, T., Seno M. American Journal of Cancer Research, 6(12), 2799-2815 (2016) [link] |
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ART-suppressed subjects with low CD4 T-cell counts segregate according to opposite immunological phenotypes Pérez-Santiago, Josué, Ouchi, Dan, Urrea, Victor, Carrillo, Jorge, Cabrera, Cecilia, Villà-Freixa, Jordi, Puig, Jordi, Paredes, Roger, Negredo, Eugènia, Clotet, Bonaventura, Massanella, Marta, Blanco Julià. AIDS., 30(15), 2275-2287 (2016) [link] doi: 10.1097/QAD.0000000000001205 |
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Gut Microbiota Linked to Sexual Preference and HIV Infection Noguera-Julian M, Rocafort M, Guillén Y, Rivera J, Casadellà M, Nowak P, Hildebrand F, Zeller G, Parera M, Bellido R, Rodríguez C, Carrillo J, Mothe B, Coll J, Bravo I, Estany C, Herrero C, Saz J, Sirera G, Torrela A, Navarro J, Crespo M, Brander C, Negredo E, Blanco J, Guarner F, Calle ML, Bork P, Sönnerborg A, Clotet B, Paredes R. EBioMedicine (2016) [link] doi: 10.1016/j.ebiom.2016.01.032 |
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Multi-item Working Memory Capacity: What Is the Role of the Stimulation Protocol? M Balagué, L Dempere-Marco. International Conference on Artificial Neural Networks, 264-271 (2016) [link] |
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A Novel Method for Disentangling Strategies from Visual Search V Pallarés, L Rami, L Dempere-Marco. BIOSIGNALS, 271-276 (2016) [link] doi: 10.5220/0005821602710276 |
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Analysis of the interactions of sulfur-containing amino acids in membrane proteins Gómez-Tamayo, J.C., Cordomí, A., Olivella, M., Mayol, E., Fourmy, D., Pardo L. Protein Science, 25(8), 1517-1524 (2016) [link] doi: 10.1002/pro.2955 |
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Computational exploration of the binding mode of heme-dependent stimulators into the active catalytic domain of soluble guanylate cyclase Agulló, L., Buch, I., Gutiérrez-de-Terán, H., Garcia-Dorado, D., Villà-Freixa J. Proteins, 84(10), 1534-1548 (2016) [link] doi: 10.1002/prot.25096 |
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Plasma B-type natriuretic peptide levels are poorly related to the occurrence of ischemia or ventricular arrhythmias during symptom-limited exercise in low-risk patients Porta, A., Barrabés,J.A., Candell-Riera, J., Agulló, L., Aguadé-Bruix, S., de León, G., Figueras, J., Garcia-Dorado D. Archives of Medical Science. 12(2), 341-348 (2016) [link] doi: 10.5114/aoms.2016.59258 |
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Simulation Modeling to Interpret the Captures of Moths in Pheromone-Baited Traps Used for Surveillance of Invasive Species: the Gypsy Moth as a Model Case Bau, J., Cardé R.T. Journal of Chemical Ecology. 0(0) (2016) [link] doi: 10.1007/s10886-016-0765-0 |
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Efficient and powerful method for combining p-values in Genome-wide Association Studies Vilor-Tejedor, N. ; Gonzalez, J.R ; Calle, M.L. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Issue: 99 (2016) [link] doi: 10.1109/TCBB.2015.2509977 |
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Molecular dynamics and intracellular signaling of the TNF-R1 with the R92Q mutation Luis Agulló, Sunny Malhotra, Nicolás Fissolo, Xavier Montalban, Manuel Comabella Journal of Neuroimmunology 289, 12–20 (2015) [link] doi: 10.1016/j.jneuroim.2015.10.003 |
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TMalphaDB and TMbetaDB: web servers to study the structural role of sequence motifs in α-helix and β-barrel domains of membrane proteins Perea M, Lugtenburg I, Mayol E, Cordomí A, Deupí X, Pardo L, Olivella M. BMC Bioinformatics 16(266) (2016) [link] doi: 10.1186/s12859-015-0699-5 |
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Modeling Optimal Strategies for Finding a Resource-Linked, Windborne Odor Plume: Theories, Robotics, and Biomimetic Lessons from Flying Insects Josep Bau; Ring T. Carde Integrative and Comparative Biology (2016) [link] doi: 10.1093/icb/icv036 |
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Cytoplasmic accumulation of NCoR in malignant melanoma: consequences of altered gene repression and prognostic significance Gallardo F, Padrón A, Garcia-Carbonell R, Rius C, González-Perez A, Arumí-Uria M, Iglesias M, Nonell L, Bellosillo B, Segura S, Pujol RM, Lopez-Bigas N, Bertran J, Bigas A, Espinosa L. Oncotarget. 6(11), 9284-94 (2016) [link] doi: 10.18632/oncotarget.3252 |
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New cryptic karyotypic differences between cattle (Bos taurus) and goat (Capra hircus) Lisa De Lorenzi, Jordi Planas, Elena Rossi, Luca Malagutti, Pietro Parma. Chromosome Research, 1(11) (2016) [link] doi: 10.1007/s10577-014-9462-4 |
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Global Adaptive Rank Truncated Product method for gene-set analysis in Association Studies N.Vilor, M.L. Calle Biometrical Journal (2014) [link] doi: 10.1002/bimj.201300192 |
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TRIFORCE: Tessellated Semi-analytical Solvent Exposed Surface Areas and Derivatives N. Drechsel, C. Fenell, K. A. Dill, and J. Villà-Freixa. J. chem. theor. comp., 10 (9),4121–4132 (2014) [link] doi: 10.1021/ct5002818 |
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Methylglyoxal Produced by Amyloid-Peptide-Induced Nitrotyrosination of Triosephosphate Isomerase Triggers Neuronal Death in Alzheimer’s Disease Marta Tajesa, Abel Eraso-Pichot, Fanny Rubio-Moscardó, Biuse Guivernau, Eva Ramos-Fernández, Mònica Bosch-Morató, Francesc Xavier Guix, Jordi Clarimón, Gian Pietro Miscione, Mercè Boada, Gabriel Gil-Gómez, Toshiharu Suzuki, Henrik Molina, Jordi Villà-Freixa, Rubén Vicente and Francisco J. Muñoz Journal of Alzheimer’s Disease 41, 273–288 (2014) [link] doi: 10.3233/JAD-131685 |
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Risk prediction scores for recurrence and progression of non-muscle invasive bladder cancer: An international validation in primary tumours M.M. Vedder, M. Márquez, E.W. de Bekker-Grob, M.L. Calle, L. Dyrskjøt, M. Kogevinas, U. Segersten, P-U Malmström, F. Algaba, W.Beukers, T.F. Ørntoft, E. Zwarthoff, F.X. Real, N. Malats, E.W. Steyerberg. PlosOne (2014) [link] doi: 10.1371/journal.pone.0096849 |
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TRIFORCE: Tessellated Semianalytical Solvent Exposed Surface Areas and Derivatives Nils J. D. Drechsel, Christopher J. Fennell, Ken A. Dill and Jordi Villà-Freixa J. Chem. Theory Comput. 10 (9), 4121–4132 (2014) [link] doi: 10.1021/ct5002818 |
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Whole genome prediction of bladder cancer risk with the bayesian lasso E López de Maturana, SJChanok, AC Picornell, N Rothman, J Herranz, ML Calle, M García-Closas, G Marenne, A Brand, A Tardón, A Carrato, DT Silverman, M Kogevinas, D Gianola, FX Real, N Malats Genetic Epidemiology, 38 (2014) [link] doi: 10.1002/gepi.21809 |
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Genetic variation in the TP53 pathway and bladder cancer risk S.Pineda, R.L.Milne, M.L.Calle, N.Rothman, E.López de Maturana, J.Herranz, M.Kogevinas, S.J.Chanock, A.Tardón, M.Márquez, L.T.Guey, M.García-Closas, J.Lloreta, E.Braum, A.González-Neira, A.Carrato, A.Navarro, D.T.Silverman, F.X.Real, N.Malats A comprehensive analysis, PLOSONE (2014) [link] doi: 10.1371/journal.pone.0089952 |
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Application of Multi-SNP Approaches Bayesian LASSO and AUC-RF to Detect Main Effects of Inflammatory-Gene Variants Associated with Bladder Cancer Risk E.López de Maturana, Y.Ye, M.L.Calle, N.Rothman, V.Urrea, M.Kogevinas, S.Petrus, S.J.Chanock, A.Tardón, M.García-Closas, A.González-Neira, G.Vellalta, A.Carrato, A.Navarro, B.Lorente-Galdós, DT.Silverman, F.X.Real, X.Wu, N.Malats PLoS ONE 8(12), e83745 (2013) [link] doi: 10.1371/journal.pone.0083745 |
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Chromatin-bound IκBα regulates a subset of Polycomb- target genes in differentiation and cancer Mulero MC., Ferres-Marco D., Islam A, Margalef P., Pecoraro M., Toll A., Drechsel N., Charneco C., Davis S., Bellora N., Gallardo F., López-Arribillaga E., Asensio E., Rodilla V., González J., Iglesias M., Shih V., Albà M., Di Croce L., Hoffmann A., Miyamoto S., Villà-Freixa J., López-Bigas N., M. Keyes W., Domínguez M., Bigas A., Espinosa L. Cancer Cell, 24(2), 151-166 (2013) [link] doi: 10.1016/j.ccr.2013.06.003 |
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An efficient algorithm to perform multiple testing in epistasis screening Van Lishout F., M Mahachie J., S Gusareva E., Urrea V., Cleynen I., Théâtre E., Charloteaux B., Calle M.L., Wehenkel L., Van Steen K. BMC Bioinformatics. 14(138) (2013) [link] doi: 10.1186/1471-2105-14-138 |
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Relation between sequence and structure in membrane proteins Olivella M, Gonzalez A, Deupi X, Pardo L. Bioinformatics. 29(13), 1589-1592 (2013) [link] doi: 10.1093/bioinformatics/btt249 |
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The role of Cysteine 6.47 in class A GPCRs Olivella M., Caltabiano G., Cordomí A. BMC Struct Biol. 13(3) (2013) [link] doi: 10.1186/1472-6807-13-3 |
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A Truncated Form of IKKα Is Responsible for Specific Nuclear IKK Activity in Colorectal Cancer Margalef P., Fernández-Majada V., Villanueva A., Garcia-Carbonell R., Iglesias M., López L., Martínez-Iniesta M., Villà-Freixa J., Mulero MC., Andreu M., Torres F., Mayo M.W., Bigas A., Espinosa L. Cell Reports (2012) [link] doi: 10.1016/j.celrep.2012.08.028 |
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New model of CFTR proposes active channel-like conformation Dalton J, Kalid O, Schushan M, Ben-Tal N, Villà-Freixa J. J Chem Inf Model (2012) [link] doi: 10.1021/ci2005884 |
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A dynamic model for the risk of bladder cancer progression Porta N, Calle ML, Malat N, Gómez G. Statistics in Medicine 31, 287-300 (2012) [link] doi: 10.1002/sim.4433 |
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Reciprocal translocations in cattle: frequency estimation De Lorenzi, L., Morando, P., Planas, J., Zannotti, M., Molteni, L. and Parma, P. Journal of Animal Breeding and Genetics (2012) [link] doi: 10.1111/j.1439-0388.2011.00983.x |
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AUC-RF: A new strategy for genomic profiling with Random Forest Calle ML, Urrea V, Boulesteix AL, Malats N. Hum Hered 72, 121-132 (2011) [link] doi: 10.1159/000330778 |
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A detailed view on Model-Based Multifactor Dimensionality Reduction for detecting gene-gene interactions in case-control data in the absence and presence of noise T. Cattaert, ML. Calle, S. Dudek, J.M. Mahachie John, F. Van Lishout, V. Urrea, M.D. Ritchie and K. Van Steen. JAnnals of Human Genetics 75, 78-89 (2011) [link] doi: 10.1111/j.1469-1809.2010.00604.x |
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mbmdr: an R package for exploring gene-gene interactions associated with binary or quantitative traits Calle,ML, Urrea, V, Malats, N, Van Steen, K Bioinformatics. 26 (17), 2198–2199 (2010) [link] doi: 10.1093/bioinformatics/btq352 |
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Gene Promoter Evolution Targets the Center of the Human Protein Interaction Network Planas, J. and Serrat, J.M. Public Library of Science ONE 5(7), e11476 (2010) [link] doi: 10.1371/journal.pone.0011476 |
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Influence of the g-conformation of Ser and Thr on the structure of transmembrane helices Deupi, X., Olivella, M., Sanz, A., Dölker, N., Campillo, M. Pardo, L. J Struct Biol 169(1), 116-23 (2010) [link] doi: 10.1016/j.jsb.2009.09.009 |
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FAM-MDR: a flexible family-base multifactor dimensionality reduction technique to detect epistasis using related individuals Cattaert, T., Urrea, V., Naj, A.C., De Lobel, L., De Wit, V., Fu, M., Mahachie John, J.M., Shen, H., Calle, M.L., Ritchie, M.D., Edwards, T.L. & Van Steen, K. Public Library of Science ONE 5(4), e10304 (2010) [link] doi: 10.1371/journal.pone.0010304 |
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Stability of Random Forest Importance Measures Calle, ML. and Urrea, V. Briefings in Bioinformatics (2010) [link] doi: 10.1093/bib/bbq011 |
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Genetic Susceptibility to Distinct Bladder Cancer Subphenotypes L.T. Guey, M. García-Closas, C. Murta-Nascimento, J. Lloreta, L. Palencia, M. Kogevinas, N. Rothman, G.Vellalta, M.L. Calle, G. Marenne, A. Tardón, A. Carrato, R. García-Closas, C. Serram, D.T. Silverman, S. Chanock, F.X. Real, N. Malats European Urology 57(2), 283-92 (2010) [link] doi: 10.1016/j.eururo.2009.08.001 |
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Tutorial on methods for interval-censored data and their implementation in R Gómez, G., Calle, ML., Oller, R., Langhor, K. Statistical Modelling 9(4), 259–297 (2009) [link] doi: 10.1177/1471082X0900900402 |
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A Sampling Based Chi-squared Test for Interval-Censored Data G Calle, ML; Gómez. Statistical Models and Methods for Biomedical and Technical Systems, 295-306 (2008) [link] doi: 10.1007/978-0-8176-4619-6_21 |
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Improving strategies for detecting genetic patterns of disease susceptibility in association studies Calle,ML., Urrea, V., Vellalta, G. Malats, N., Van Steen, K. Statistics in Medicine 27, 6532-654 (2008) [link] doi: 10.1002/sim.3431 |
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A Sampling Based Chi-squared Test for Interval-Censored Data Calle,ML., Gómez, G. Statistical Models and Methods for Biomedical and Technical Systems, ISBN 978-0-8176-4464-2 (2008) [link] doi: 10.1007/978-0-8176-4619-6_21 |
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Prognostic Factors and Prediction of Residual Survival for Hospitalized Elderly Patients A. Calle, ML., Roura, P., Arnau, A., Yáñez, A., Leiva. Advances in Statistical Methods for the Health Sciences (2007) [link] doi: 10.1007/978-0-8176-4542-7_11 |
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Bladder cancer prognosis in relationship to variation in 108 genes coding for proteins involved in inflammatory pathways C. Murta-Nascimento, F.X. Real, G. Vellalta, M. Garcia-Closas, N., Rothman, M. Calle, J.Lloreta, A. Tardon, A. Carrato, R. García-Closas, C. Serra, D.T. Silverman, M. Dosemeci, J.A. Sanchez, V. Urrea, S. Chanock, M. Kogevinas, N. Malats. BJU International, 100(s3), 1–5 (2007) [link] |
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Study of bladder cancer susceptibility conferred by 309 SNPs in 109 genes participating in inflammatory pathways G. Vellalta, N. Rothman, C. Murtanascimento, M. Calle, J. A Sánchez, M. García-Closas, M. Gumá, J. Lloreta, J. Fortuny, A. Tardón, A. Carrato, R. García-Closas, C. Serra, D. T., Silverman, M. Dosemeci, V. Urrea, S. Chanock, M. Kogevinas, F. X Real And N. Malats. BJU International 100 (s3), 1–5 (2007) [link] |
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Árboles de Clasificación y Regresión en la Investigación Biomédica Calle, M.L i Sánchez-Espigares, J.A. Medicina Clínica 129, 702-706 (2007) [link] doi: 10.1157/13112516 |
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Skewed expression and up-regulation of the IL-12 and IL-18 receptors in resting and activated CD4 T cells from HIV-1-infected patients Robert G., Peña R. Cabrera C., Coma G., Ruiz-Hernandez R., Guerola R., Clotet B., Ruiz L., Esté J.A., Calle M.L., Bofill M. Journal of Leukocyte Biology 82, 72-78 (2007) [link] doi: 10.1189/jlb.1106698 |
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Number of consumers necessary for shelf-life estimations based on survival analysis statistics Hough, H, Calle, ML, Curia, A y Serrat, C. Food Quality and Preference 18, 771-775 (2007) [link] doi: 10.1016/j.foodqual.2007.01.003 |
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Prognostic Factors and Prediction of Residual Survival for Hospitalized Elderly Patients. Advances in Statistical Methods for the Health Sciences Calle,ML., Roura, P., Arnau, A., Yáñez, A., Leiva, A. Statistics for Industry and Technology, ISBN 0817643680 (2007) [link] doi: 10.1007/978-0-8176-4542-7_11 |
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Interval censoring: identifiability and the constant-sum property Oller, R., Gómez, G., Calle, M.L. Biometrika 94, 61-70 (2007) [link] doi: 10.1093/biomet/asm002 |
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Increased percentage of CD4 T-cells expressing IL-12R beta 1 and IL-18R alpha in HIV-1 infection: a potential compensatory mechanism for the loss of Th1 response de Arquer, GR, Cabrera, C, Coma, G, Ruiz-Hernandez, R, Este, JA, Calle, ML, Bofill, M. Immunology 120(1), 15-15 (2007) [link] |
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Regression modelling of competing risks in a bladder cancer study Porta-Bleda, N., Calle,ML., Gómez, G., Malats, N. Proceedings of the 22nd International Workshop on Statistical, 512-517, ISBN 978-84-690-5943-2 (2007) [link] |
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Neutral amino acid transport mediated by ortholog of imino acid transporter SIT1/SLC6A20 in opossum kidney cells. Ristic Z, Camargo SM, Romeo E, Bodoy S, Bertran J, Palacin M, Makrides V, Furrer EM, Verrey F. Am J Physiol Renal Physiol 290, F880-F887 (2006) [link] doi: 10.1152/ajprenal.00319.2005 |
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Granulocyte-macrophage colony-stimulating factor increases L-arginine transport through the induction of CAT2 in bone marrow-derived macrophages Martin L, Comalada M, Marti L, Closs EI, MacLeod CL, Martin del Rio R, Zorzano A, Modolell M, Celada A, Palacin M, Bertran J. Am J Physiol Cell Physiol. 290, C1364-C1372. (2006) [link] doi: 10.1152/ajpcell.00520.2005 |
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Bayesian survival analysis modelling applied to sensory shelf life of foods Calle, ML, Hough, H, Curia, A, Gómez, G. Food Quality and Preference 17, 307-312 (2006) [link] doi: 10.1016/j.foodqual.2005.03.012 |
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Arginine transport via cationic amino acid transporter 2 plays a critical regulatory role in classical or alternative activation of macrophages Yeramian A, Martin L, Serrat N, Arpa L, Soler C, Bertran J, McLeod C, Palacin M, Modolell M, Lloberas J, Celada A. J Immunol. 176, 5918-5924 (2006) [link] doi: 10.4049/jimmunol.176.10.5918 |
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Macrophages require distinct arginine catabolism and transport systems for proliferation and for activation Yeramian A, Martin L, Arpa L, Bertran J, Soler C, McLeod C, Modolell M, Palacin M, Lloberas J, Celada A. J Immunol. 36, 1516-1526 (2006) [link] doi: 10.1002/eji.200535694 |
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y(+) LAT-1 mediates transport of the potent and selective iNOS inhibitor, GW274150, in control J774 macrophages Baydoun AR, Bertran J, Thakur S, Dawson J, Palacin M, Knowles RG. Amino Acids 31, 101-109. (2006) [link] doi: 10.1007/s00726-005-0311-9 |
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Analyzing sequential spells via conditional survival models Calle, ML, Espinal, A Gómez, G. Proceedings 21st International Workshop on Statistical, Hinde, J. Einbeck, J & Newell, J. Editors. ISBN 1-86220-180-3 (2006) [link] |
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Semiparametric hierarchical model for a regression problem with an interval-censored covariate Calle, M.L. y Gómez, G. Australian and New Zealand Journal of Statistics 47, 351-364 (2005) [link] doi: 10.1111/j.1467-842X.2005.00400.x |
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Identification of LAT4, a novel amino acid transporter with system L activity Bodoy, L. Martín, A. Zorzano, M. Palacín, R. Estévez and J. Bertran J Biol Chem 280, 12002-12011 (2005) [link] doi: 10.1074/jbc.M408638200 |
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Electroantennographic resolution of pulsed pheromone plumes in two species of moths with bipectinate antennae Bau J, Justus KA, Loudon C, Carde RT. Chem Senses 30, 771-780 (2005) [link] doi: 10.1093/chemse/bji069 |
